Genomic Diversity in Campylobacter jejuni

 

Campylobacteriosis is the most common enteric disease worldwide. Raw chicken, unpasteurized milk and non-chlorinated water constitute the main sources of Campylobacter infections. Since the publication of the genome sequence of Campylobacter jejuni NCTC 11168 in February 2000, additional evidence suggests that C. jejuni exhibits high genome diversity. This diversity might, in part explain the large spectrum of disease outcomes, ranging from asymptomatic colonization to acute inflammatory diarrhea and Guillain-Barre syndrome (an autoimmune disorder of the peripheral nervous system). To investigate this diversity, COBRE Investigator Dr. Alain Stintzi and collaborators at OSU identified the unique genomic DNA sequences from two Campylobacter strains, C. jejuni ATCC 43431 and 81-176, by comparison with C. jejuni NCTC 11168, using a shotgun DNA microarray approach. A shotgun microarray was constructed for each strain by arraying approximately 10,000 individual whole plasmids form a genomic library onto a glass slide. DNA fragments unique to C. jejuni ATCC 43431 and 81-176 were identified by competitive hybridization to the array with genomic DNA of C. jejuni NCTC 11168. Approximately 2,000 plasmids carrying unique DNA fragments were identified. The DNA inserts were sequenced by the OUHSC Laboratory for Genomics and Bioinformatics. Up to 150 kb of new chromosomal DNA unique to C. jejuni ATCC 43431 and 81-176 were identified. These sequences encode components of a type IV secretion apparatus, restriction-modification systems, and proteins with a potential function in electron transport. These unique genes are likely associated with C. jejuni fitness and virulence. The characterization of unique genes from C. jejuni ATCC 43431 has been recently published in the Journal of Bacteriology (2004. Vol. 186, No. 14, p. 4781-4795) and the manuscript describing the identification of the unique genes from C. jejuni 81-176 will appear in the Journal of Clinical Microbiology in Spring 2005